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Jose Luis Soto Vázquez - Methylation analysis to study tumor ancestry and evolution
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Open to new opportunities

Jose Luis Soto Vázquez

Methylation analysis to study tumor ancestry and evolution
University of Vigo • Vigo • Spain

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • BS-seq analysis
Languages
  • English
  • Spanish
Programming languages
  • Perl
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Allows users to infer population structure. POPSTR is a Bayesian integrative…
Identifies intermediate-size indels using a combination of soft-clipped…
Evaluates a phylogeny using a root-to-tip approach to define sub-lineages…
RNA-seq analysis
Provides an approach for integrating transcript assemblies. Mikado is a…
Consists of a dimension reduction technique designed for complex data sets with…
Enables users to compare the global and local biological signal of networks.…
BS-seq analysis
Examines epigenomic and transcriptomic next generation sequencing (NGS) data.…
Allows users to process targeted enriched Illumina sequences from raw reads to…
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…