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Josep Abril - Sequence analysis and visualization.
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Josep Abril

Sequence analysis and visualization.
University of Barcelona • Barcelona • Spain

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
  • Spanish
Programming languages
  • C
  • Perl
  • PHP
  • Python
  • R
  • Shell (Bash)
  • Other

TOOLS MAINTAINED

PlanNET

Web

PlanNET

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Predicts different protein interactions networks from eleven S. mediterranea transcript datasets. PlanNET is a web application that allows researchers to explore these networks in different ways in…
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gff2aplot

Desktop

gff2aplot

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Generates two-dimensional (2D) annotated alignment plots in PostScript format. gff2aplot can serve as a visualization filter after running some independent alignment tool. It parses alignment…
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Gff2ps

Desktop

Gff2ps

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Permits users to visualize annotations of genomic sequences. Gff2ps takes the annotated features on a genomic sequence as input, and produces a visual output. It can plot the features in a variety of…

Fields of interest

WGS analysis
Performs common tasks in metagenomic data analysis from raw read quality…
Aims to address the cluster containment problem for phylogenetic networks.…
Simulates genotypes for case-parent triads, case-control, and quantitative…
De novo sequencing analysis
Allows users to realize accurate predictions. RIFRAF is an algorithm that can…
Identifies convergent changes. PCOC is based on the following definition: a…
Scaffolds genomes using paired-end RNA-sequencing reads. P_RNA_scaffolder is a…
RNA-seq analysis
Enables evaluation, filtering, and analysis of gene models, as well as…
Deduces the molecular interactions and pathways associated with a fusion.…
Quantifies miRNA from small RNA-seq. miR-MaGiC minimizes noise associated with…