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Josh Faber-Hammond - Comparative evolutionary genetics
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Josh Faber-Hammond

Comparative evolutionary genetics
Reed College • Portland • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
  • English
Programming languages
  • Perl
  • R
  • Shell (Bash)

Reviews and Discussions


Blast2GO 2018-02-16, 22:40:38
Overall this program is easy to use, but I have many complaints about how commercial it has become. The free version has become virtually unusable for even relatively small NGS dataset due to speed…


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Fields of interest

WGS analysis
Allows users to simulate copy number variants (CNVs) for whole exome sequencing…
Permits users to cluster and visualize samples based on DNA mismatch patterns.…
Allows users to identify signals in an ordered sequence of numbers. This…
De novo sequencing analysis
Provides a collection of open-source tools and resources for modelling,…
Allows calculation of the state of any node in a phylogeny under the marginal…
Identifies inherited meiotic recombination (MR) events. MRLR is a pipeline that…
RNA-seq analysis
Searches specific gene expression pattern from time-series gene expression data…
Enables users to analyze pathways based on the variability of the expression of…
Quantifies miRNA from small RNA-seq. miR-MaGiC minimizes noise associated with…