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Jude Short - Computational scence
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Jude Short

Computational scence
University of Cambridge • Cambridge • United Kingdom

Skills and expertise

Fields of interest
  • Synthetic biology
  • SPIM
  • Protein interaction analysis
Languages
  • English
Programming languages
  • C

Fields of interest

Synthetic biology
Deduces the "lab-of-origin" of DNA sequence datasets. predict-lab-origin is an…
Aims to assemble multiple DNA fragments in a single reaction using a…
Allows modular assembly of Golden Gate-compatible cloning broad-host range…
SPIM
Mimics wave-optical image formation in light-sheet microscopes. Biobeam…
Consists of a cloud based deep learning solution for image segmentation of…
Enables high speed three-dimensional imaging of large samples at high…
Protein interaction analysis
Models signaling networks from perturbation data. STASNet is a computational…
Performs computation of distance precision matrix and regularized distance…
Estimates interaction partners from sequence data among the paralogous proteins…