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Kaili Fan - bioinformatics
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Kaili Fan

bioinformatics
University of Massachusetts System • University of Massachusetts Medical School • Worcester • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • BS-seq analysis
Languages
  • English
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Assists users in analyzing next-generation sequencing (NGS) data. snakePipes…
Assists in estimating the probability of related individuals sharing a rare…
Serves for repetitive element de-fragmentation and annotation. RepeatCraft…
RNA-seq analysis
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Provides a visualization engine module. genomeview was developed for both…
BS-seq analysis
Detects candidate regions and evaluates statistical significance at the region…
Performs common tasks in metagenomic data analysis from raw read quality…
Calculates average amino-acid identity (AAI) between a query proteome and all…