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Peter D Karp - Developer of bioinformatics software and databases
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Open to new opportunities

Peter D Karp

Developer of bioinformatics software and databases
SRI International • Menlo Park • United States of America (the)

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • MS-based untargeted metabolomics
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Lisp

TOOLS MAINTAINED

MetaCyc

Dataset

MetaCyc

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Collects metabolic pathways, biochemical reactions, enzymes, genes and chemical compounds from various organisms. MetaCyc is a database, part of the BioCyc PGDB collection, containing over 2 600…

PseudoCyc

Dataset

PseudoCyc

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Provides a pathway-genome database (PGDB) for Pseudomonas aeruginosa, strain PAO1. PseudoCyc is a manually curated repository that gathers more than 800 biochemical reactions and over 700 enzymes. It…

Omics Dashboard

Dataset

Omics Dashboard

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Enhances the interpretation of omics data to reduce analysis time and to make omics data more accessible. Omics Dashboard is a customizable visualization tool that enables user to quickly survey…
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CCO

Terminology

CCO / Cell Component Ontology

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Intends to describe the cellular architecture of a unicellular organism, or a cell type from a multicellular organism as well as the particular cellular components from which a specific type of cell…

YeastCyc

Dataset

YeastCyc

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A Pathway/Genome Database of the model eukaryote Saccharomyces cerevisiae S288c. YeastCyc contains, in addition to genomic information, metabolic pathway, reaction, enzyme, and compound information,…

HumanCyc

Dataset

HumanCyc

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Provides a genome-based view of human nutrition that associates the essential dietary requirements of humans with a set of metabolic pathways whose existence is supported by the human genome. The…

BioCyc

Dataset

BioCyc

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Allows users to search information about pathway/genomes. BioCyc is a database that mixes thousands of genomes with additional information curated from the biomedical literature by biologist…

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