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Kasey Vickers - Assistant Professor of Medicine
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Kasey Vickers

Assistant Professor of Medicine
Vanderbilt Health • Vanderbilt University Medical Center • Nashville • United States of America

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • scRNA-seq analysis
  • Gene expression array analysis
Languages
  • English

TOOLS MAINTAINED

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TIGER

Desktop

TIGER / Tools for Integrative Genome analysis of Extracellular sRNAs

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Allows to automatically perform analysis of extracellular RNA (exRNAs). TIGER is a data analysis pipeline designed for the study of lipoprotein small RNA sequencing sRNAs; but it has great…

Fields of interest

RNA-seq analysis
Enables adaptive correlation and covariance matrix shrinkage. CorShrink is a…
Predicts transcriptomic structural variants (TSVs) from RNA-seq data. SQUID is…
Simplifies downstream utilization of high-throughput sequencing (HTS) data.…
scRNA-seq analysis
Simplifies analysis of mixed populations present in cell suspensions derived…
Assists users in learning a molecular signature from the RNAsc data. DropLasso…
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Gene expression array analysis
Permits the construction of tumor-cell specific gene/protein co-expression…
Allows clustering of large-scale networks. HipMCL is a distributed-memory…
Permits removing electrical stimulation artifacts from multielectrode array…