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KateK - rna seq
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rna seq
Polish Academy of Sciences • Instytut Chemii Bioorganicznej • PoznaƄ • Poland

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
  • English
Programming languages
  • Javascript
  • PHP
  • Python
  • R
  • Shell (Bash)

Fields of interest

De novo sequencing analysis
Simultaneously quantifies differences in differential transcription factor (TF)…
Serves for Illumina short read sequencing data. PriLive allows users to remove…
Implements several different transition kernels for updating a phylogenetic…
RNA-seq analysis
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Makes base calls in low coverage regions. PBHoover is a consensus and…
Serves for visual knowledge exploration in molecular interaction networks. This…
Gene expression array analysis
Permits removing electrical stimulation artifacts from multielectrode array…
Models data to maintain realistic patterns of variation and correlation. FANGS…
Handles enrichment heatmaps. EnrichedHeatmap is an R package able to gather…