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Kathrin Baumann - PhD student in Microbial Ecology
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Kathrin Baumann

PhD student in Microbial Ecology
Board of the Swiss Federal Institutes of Technology • Swiss Federal Institute of Aquatic Science and Technology • Dübendorf • Switzerland

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • German
Programming languages
  • R

Fields of interest

De novo sequencing analysis
Considers DNA sequence information and chromatin accessibility data to forecast…
Serves as a fully automatic analysis of protein family conservation within a…
Allows users to infer population structure. POPSTR is a Bayesian integrative…
RNA-seq analysis
Performs tree reconstruction based on the supermatrix paradigm. OneTwoTree is a…
Enables decomposition of a gene tree into trees consistent with a species tree.…
Allows long read alignment to large reference genomes by splitting the index…
Metagenomic sequencing analysis
Permits exome, whole-genome, and targeted sequencing analyses. Mosdepth is a…
Allows users to return all read mappings within a given edit distance. FEM is…
Allows users to map long readings with high error rates. lordFAST is designed…