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Katja Koeppen - Host-pathogen interactions
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Open to new opportunities

Katja Koeppen

Host-pathogen interactions
Dartmouth College • Hanover • United States of America

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression array analysis
  • Protein interaction analysis
Languages
  • English
  • German
Programming languages
  • R

TOOLS MAINTAINED

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ScanGEO

Desktop

ScanGEO

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Mines high throughput gene expression data to identify genes and pathways of interest to answer biological questions relevant to diverse fields of study. ScanGEO uses a database query to identify…

Fields of interest

RNA-seq analysis
Assists users in determining differential expression between two…
Provides a method for phylogenetic reconstruction SAMedian calculates the…
Detects and assists in designing potential target sites within human genome.…
Gene expression array analysis
Analyzes the association of gene expression indices with interval times. GAIT…
Carries out gene expression correlation analysis. GECO is a web server that…
Permits researchers to conduct investigation and construct high-quality…
Protein interaction analysis
Facilitates phylostratigraphic analysis. phylostratr automates sequence…
Allows global pairwise network alignment of protein-protein interactions (PPI)…
Permits detection of variables linked to disease diagnosis and progression in…