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Kazuho Ikeo - Research of Genomics
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Kazuho Ikeo

Research of Genomics
National Institute of Genetics • Mishima • Japan

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • R

Fields of interest

De novo sequencing analysis
Provides a method for phylogenetic reconstruction SAMedian calculates the…
Aims to distinguish the distribution of base frequencies at variable sites for…
Provides independent C++ implementations of the SUPERB algorithm for counting…
RNA-seq analysis
Carries out gene expression correlation analysis. GECO is a web server that…
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Allows users to return all read mappings within a given edit distance. FEM is…
Metagenomic sequencing analysis
Designs probe sets for whole genome capture of highly diverse target sequences…
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
An indexing scheme to support sequence-based querying of terabyte-scale…