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Kazuo Fujiwara - Mechanism of protein-protein interaction
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Kazuo Fujiwara

Mechanism of protein-protein interaction
Soka University • Tokyo • Japan

Skills and expertise

Fields of interest
  • Immune system analysis
  • BS-seq analysis
  • NMR-based proteomics analysis
Languages
  • Japanese
Programming languages
  • C
  • Perl
  • PHP

TOOLS MAINTAINED

OLIGAMI

Dataset

OLIGAMI / OLIGomer Architecture and Molecular Interface

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Gathers verified coordinates for the biological molecules for all Protein Data Bank (PDB) entries. OLIGAMI is a database allowing to (i) visualize 3D structures of biological molecules, (ii) browse…

Fields of interest

Immune system analysis
Allows users to determine the clonal-family-specific substitution profile for…
Provides several applications based on a Bayesian Markov Chain Monte Carlo…
Determines interaction between T cell receptors (TCRs) and peptides presented…
BS-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Integrates both phenotypic measurements and genetic variants as features for…
Annotates and filtrates variant files. VarAFT allows the comparison of several…
NMR-based proteomics analysis
Automates the elimination of noise peaks. Filt Robot employs convolutional…
Assists users to perform spectra analysis. Dumpling comprises the following…
Performs general ensemble-based validation step and a simple and…