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Kazuo Fujiwara - Mechanism of protein-protein interaction
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Kazuo Fujiwara

Mechanism of protein-protein interaction
Soka University • Tokyo • Japan

Skills and expertise

Fields of interest
  • Immune system analysis
  • BS-seq analysis
  • NMR-based proteomics analysis
Languages
  • Japanese
Programming languages
  • C
  • Perl
  • PHP

TOOLS MAINTAINED

OLIGAMI

Dataset

OLIGAMI / OLIGomer Architecture and Molecular Interface

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Gathers verified coordinates for the biological molecules for all Protein Data Bank (PDB) entries. OLIGAMI is a database allowing to (i) visualize 3D structures of biological molecules, (ii) browse…

Fields of interest

Immune system analysis
Trains pan-specific human leukocyte antigen (HLA)-peptide binding affinity…
Assembles and serves for visualization of known immune response to a specific…
Assists users in detecting antigenic variance. CE-BLAST is an online tool that…
BS-seq analysis
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Predicts de novo profile generation based on sequence context. SPBuild…
Allows user-friendly data exploration, visualization and interpretation of…
NMR-based proteomics analysis
Automates the elimination of noise peaks. Filt Robot employs convolutional…
Assists users to perform spectra analysis. Dumpling comprises the following…
Performs general ensemble-based validation step and a simple and…