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Kees van der Ark - Microbiologist
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Kees van der Ark

Microbiologist
Academic Medical Center • Amsterdam • Netherlands

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • aCGH data analysis
Languages
  • English
Programming languages
  • Python

Fields of interest

WGS analysis
Performs variable selection in linear mixed models (LMM). ggmix is a general…
Enables decomposition of a gene tree into trees consistent with a species tree.…
Includes all the necessary functions to build and test predictors from…
RNA-seq analysis
Allows to build a high-quality RNA-seq-based Gene Co-expression Network (GCN)…
Calculates average amino-acid identity (AAI) between a query proteome and all…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…
aCGH data analysis
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Analyzes next-generation sequencing (NGS) from experiments using unique…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…