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Keisuke Tanaka - Plant genomics
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Keisuke Tanaka

Plant genomics
Tokyo University of Agriculture • Tokyo • Japan

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • Japanese
Programming languages
  • R
  • Shell (Bash)

Fields of interest

De novo sequencing analysis
Integrates multiple assayed transcription factors (TFs) bound/unbound DNA…
Aims to represent a family of aligned protein sequences or a collection of…
Handles repeated sequences for phylogenic inference. GCTree allows users to…
RNA-seq analysis
Recognizes tissue-specific poly(A) sites (tsPAs) in plants. TSAPA is based on a…
Provides a wide range of descriptors of transcript quality and generates a…
Allows to build a high-quality RNA-seq-based Gene Co-expression Network (GCN)…
Metagenomic sequencing analysis
Allows users to discover a family of binary/ternary/ratio (BTR) models with…
Assesses the relationships between metabolites in an untargeted metabolomics…
Maps a read against a reference region if and only if its estimated alignment…