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Nicole Kim - bioinformatics
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Nicole Kim

bioinformatics
3BIGS • Republic of Korea

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • C

Fields of interest

De novo sequencing analysis
Permits users to classify contigs. SCOP is a scaffolding method that optimizes…
Enables decomposition of a gene tree into trees consistent with a species tree.…
Allows generation and evaluation of phylogenetic trees. UBCG is based on the…
RNA-seq analysis
Predicts isoform expression on entirely held-out libraries. APARENT is a…
Searches specific gene expression pattern from time-series gene expression data…
Detects prognostic biomarkers and gene modules. G2Vec is a network-based deep…
Metagenomic sequencing analysis
Permits parallel, fine-grained pairwise alignment of metagenomes. IMSAME is a…
Allows generation and evaluation of phylogenetic trees. UBCG is based on the…
Enables automatic identification and visualization of genome-scale metabolic…