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Korin Eckstrom - Bacterial Molecular Genetics
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Korin Eckstrom

Bacterial Molecular Genetics
University of Vermont • Burlington • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Assists users to perform colocalization of genomic features. Coloc-stats is a…
Offers a method to detect potential single nucleotide polymorphism (SNP)-SNP…
Performs cancer driver gene prediction. LOTUS is a machine learning-based…
RNA-seq analysis
Allows users to process targeted enriched Illumina sequences from raw reads to…
Deduces the molecular interactions and pathways associated with a fusion.…
Determines transcript-level abundance on reduced-representation expression…
Metagenomic sequencing analysis
Provides a tool for the inference of viral transmissions. QUENTIN incorporates…
Gathers DNA sequences via clustering. STARS uses K-means algorithm and GSP…
Enables identification of near full-length 16S rRNA gene sequences in microbial…