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Kostas Alexiou - Agrigenomics
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Kostas Alexiou

Agrigenomics
Government of Catalonia • Institute for Research and Technology in Food and Agriculture • Barcelona • Spain

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
Programming languages
  • Python

Fields of interest

WGS analysis
Provides a reidentification attack method. Beacon_attack is an application that…
Enables utilization of available data and accurate inference of species tree…
Identifies convergent changes. PCOC is based on the following definition: a…
De novo sequencing analysis
Consists of a multiple sequence alignment (MSA) tool based on T-Coffee (TC) to…
Assists for merging overlapping paired-end reads. OverlapPER returns both…
Identifies insertions and deletions (indels) from DNA-seq or RNA-seq data.…
RNA-seq analysis
Recognizes tissue-specific poly(A) sites (tsPAs) in plants. TSAPA is based on a…
Performs a structural annotation of protein-coding genes. TGFam-Finder…
Calculates average amino-acid identity (AAI) between a query proteome and all…