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Kwangsik Nho - bioinformatics
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Kwangsik Nho

bioinformatics
Indiana University School of Medicine - Lafayette • West Lafayette • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • BS-seq analysis
Languages
  • English
Programming languages
  • Python

Fields of interest

WGS analysis
Handles large Multi-Locus Sequence Typing (MLST) schemes. MentaLiST can call…
Serves for mutation-based clustering of tumors. ccpwModel's binary variables…
Suits for automated pipeline optimization. ToTem enables the integration of a…
RNA-seq analysis
Predicts transcriptomic structural variants (TSVs) from RNA-seq data. SQUID is…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Allows detection of collaborative transcription factor pairs. MMARGE consists…
BS-seq analysis
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Provides a library written in Nim programming language that suits for simple…
Allows user-friendly data exploration, visualization and interpretation of…