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Lianming Du

Transcriptome
Chengdu University • Chengdu • China

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Gene expression array analysis
Languages
  • Chinese
Programming languages
  • Python

Fields of interest

WGS analysis
Allows users to write pipelines in the Go programming language. SciPipe is a…
Predicts untested single crosses (SCs) in plant breeding. REALbreeding aims to…
Allows users to return all read mappings within a given edit distance. FEM is…
De novo sequencing analysis
Indexes very large and repetitive references to align short reads to them very…
Enables genotyping and variant annotation of resequencing data produced by…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
Gene expression array analysis
Classifies protein sequence and identifies remote protein homology via…
Predicts de novo profile generation based on sequence context. SPBuild…
Allows clustering of large-scale networks. HipMCL is a distributed-memory…