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Kimberly MacKay - Bioinformatician • Master's degree
Open to new opportunities
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Open to new opportunities

Kimberly MacKay

Bioinformatician • Master's degree

University of Saskatchewan • Saskatoon, Canada

Skills and expertise

Omics and technologies

  • De novo sequencing analysis
  • RNA-seq analysis
  • BS-seq analysis
  • Hi-C analysis

Software tools and databases

  • BLASTN
  • BLASTP
  • BLASTX
  • Bowtie
  • Bowtie2
  • FastQC
  • GEO
  • HiCUP
  • HOMER
  • NCBI
  • SeqMonk
  • TopHat
  • UCSC Genome Browser

Maths and IT

  • Algorithms
  • Artificial Intelligence
  • Bioinformatics
  • Computer Science
  • Data Analysis
  • Data Structures
  • Databases
  • Information Science
  • Machine Learning
  • Modelling/Simulation
  • Statistics

Life Science

  • Biochemistry
  • Biology
  • Cell Biology
  • Molecular Biology
  • Systems Biology

General Skills

  • Analytics
  • Communication
  • Project management
  • Public speaking
  • Quality control
  • Scientific writing
  • Technical writing

Programming languages

  • C++
  • Java
  • Javascript
  • MATLAB
  • Perl
  • PHP
  • Python
  • R
  • Shell (Bash)
  • Other

Languages

  • English
  • French

Favorites and Collections

Favorites

GrapHi-C
Desktop

Collections

No collections...

Bioinformatics projects

Tools maintained

SonHi-C

Desktop

SonHi-C

(0) 0 discussion(s)
Allows users to determine 3D genome organization from Hi-C data. SonHi-C is a program implemented in a non-procedural language and tested with an existing Hi-C dataset from fission yeast. This…

GrapHi-C

Desktop

GrapHi-C

(0) 0 discussion(s)
Converts a normalized whole-genome contact map into an adjacency matrix. GrapHi-C uses a graph-based representation of a whole-genome contact map and existing tools to more intuitively visualize Hi-C…

Education

Doctor of Philosophy
University of Saskatchewan
2016 - Today
Computer Science and Bioinformatics
Master of Science
University of Saskatchewan
2014 - 2016
Computer Science and Bioinformatics
Bachelor of Science
University of Saskatchewan
2008 - 2012
Biochemistry