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Madiha Shabbir - NGS
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Madiha Shabbir

Lahore University of Management Sciences • Lahore • Pakistan

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
  • English
Programming languages
  • C++

Fields of interest

De novo sequencing analysis
Provides a deep neural network base caller for nanopore sequencing. Chiron…
Allows users to infer tumor progression which includes mutation losses from…
Enables researchers to utilize convolutional neural networks (CNNs). Pysster is…
RNA-seq analysis
Allows clustering of large-scale networks. HipMCL is a distributed-memory…
Serves to improve RNA-seq read alignment. iMapSplice processes by performing an…
Maps bisulfite-treated short DNA reads to a reference genome. BisPin supports…
Gene expression array analysis
Handles enrichment heatmaps. EnrichedHeatmap is an R package able to gather…
Allows detection of expanding, contracting and steady peaks from time course…
Supports the validation of experiments by annotating variants and prioritizing…