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Malte Rühlemann - Metagenomics
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Malte Rühlemann

Metagenomics
Clinical Research Center Kiel • Kiel • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • German
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Allows users to infer population structure. POPSTR is a Bayesian integrative…
Enables genotyping and variant annotation of resequencing data produced by…
Enables computation of kinship from the founder inbreeding coefficients. PedKin…
De novo sequencing analysis
Detects partial haplotype matches in a given cohort. fastLS consists of a set…
Consists of a codon-correct alignment and genome annotation tool. VIRULIGN…
Reconstructs repetitive sequences, especially in bacterial genomes, using the…
Metagenomic sequencing analysis
Assists users in counting small k-mer frequencies in nucleotide sequences.…
Provides a general framework for Bayesian inference of reticulate evolution.…
Assists user in gene team problem. This algorithm has a time complexity…