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Manan Shah - PA2
Open to new opportunities
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Open to new opportunities

Manan Shah

PA2
Council of Scientific and Industrial Research • National Chemical Laboratory • Pune • India

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Java
  • Perl

TOOLS MAINTAINED

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KO2Path-Path2Class

Desktop

KO2Path-Path2Class

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Assists researchers in analyzing Tax4Fun Output. KO2Path-Path2Class is a script package that was developed to carry out an in-depth functional analysis of the Amplicon Metagenomics dataset. It…

Fields of interest

De novo sequencing analysis
Classifies protein sequence and identifies remote protein homology via…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
Reconstructs repetitive sequences, especially in bacterial genomes, using the…
RNA-seq analysis
Provides a de novo assembler. STAble is composed of three modules: (1)…
Recognizes and determines expression quantitative trait loci (eQTL). PolyQTL…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
Metagenomic sequencing analysis
Allows users to process targeted enriched Illumina sequences from raw reads to…
Provides a tool for ortholog identification. JustOrthologs focuses on orthologs…
Executes exact variance component tests in longitudinal microbiome study.…