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Manuel Ruiz - Plant Genomics
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Manuel Ruiz

Plant Genomics
Centre de Coopération Internationale en Recherche Agronomique pour le Développement • Paris • France

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • aCGH data analysis
Languages
  • French
Programming languages
  • Perl

Fields of interest

WGS analysis
Genotype tandem repeats (TRs) at population scale. GtTR is a probabilistic…
Ranks genes by using a method considering their phenotypes to create feature…
Detects partial haplotype matches in a given cohort. fastLS consists of a set…
De novo sequencing analysis
Constructs and publishes websites for synteny block analyses by exploiting…
Assists for profiling circulating tumor DNA (ctDNA). NG-TAS features several…
Provides assistance for comparative analysis of draft genomes. Pan4Draft…
aCGH data analysis
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…
Consists of a Bayesian, unsupervised, integrative clustering model for…