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Marcos J. Araúzo-Bravo - Developin of computational tools for understanding gene regulation. Trancriptomics, Epigenomics, Metaboli Engineering, Next Generation Sequencing, Cellular Reprograming, Cancer, Aging.
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Marcos J. Araúzo-Bravo

Developin of computational tools for understanding gene regulation. Trancriptomics, Epigenomics, Metaboli Engineering, Next Generation Sequencing, Cellular Reprograming, Cancer, Aging.
Biodonostia • Donostia / San Sebastián • Spain

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • BS-seq analysis
  • DNA methylation array analysis
Languages
  • English
  • Spanish
Programming languages
  • C
  • MATLAB
  • Python
  • R

TOOLS MAINTAINED

NaviSE

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NaviSE

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Processes and integrates multiple genome-wide Next Generation Sequencing (NGS) epigenomics signals from various input file formats into an interactive HTML report. NaviSE was designed to perform…

P3BSseq

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P3BSseq / Parallel Processing Pipeline for analysis of Bisulfite Sequencing data

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A pipeline for automatic analysis of Bisulfite sequencing (BSseq) reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment and generates…

Fields of interest

RNA-seq analysis
Provides a predictor that combines the deleteriousness index of the artificial…
Corrects batch effects (from multiple confounding variables) and library depth.…
Permits cluster identification using ensemble clustering. diceR assists users…
BS-seq analysis
Allows to detect gene families in transcriptomes under strong selection. FUSTr…
Detects candidate regions and evaluates statistical significance at the region…
Combines structural variation (SV) calls from different algorithms to reduce…
DNA methylation array analysis
Provides a visualization engine module. genomeview was developed for both…
Enables to build custom genome browsers. GIVe is a programming library allowing…
Recognizes spatiotemporal relationships in the human brain. brainImageR offers…