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Marten Boetzer

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BaseClear • Leiden • Netherlands

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Perl

Fields of interest

WGS analysis
Genotype tandem repeats (TRs) at population scale. GtTR is a probabilistic…
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Identifies relevant associations amongst a large number of variables. MICtools…
De novo sequencing analysis
Allows to scale genome-wide analysis. Dot2dot is an algorithm for tandem repeat…
Refines regulatory motifs. LMMO consists of a large-margin-type algorithm that…
Identifies precise transcription factor binding sites (TFBS). DeepSNR is based…
Metagenomic sequencing analysis
Automates the discovery of chemical organizations, and conducts a quantitative…
Performs secure analyses and visualization of users’ private functional…
Handles repeated sequences for phylogenic inference. GCTree allows users to…