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Martin Abba - PhD, CONICET Researcher
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Martin Abba

PhD, CONICET Researcher
National University of La Plata • La Plata • Argentina

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression microarray analysis
Languages
  • English
  • Spanish
Programming languages
  • PHP
  • R

Favorites and Collections

Favorites

MeV
Desktop
Web
Savant
Desktop
Subread
Desktop
Krona
Desktop
NetworkAnalyst
Web
ClueGO
Desktop
CluePedia
Desktop
UCSC Xena
Web
Desktop
InnateDB
Dataset

Collections

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Reviews and Discussions

LATEST REVIEWS

StepMiner 2018-07-27, 02:05:10
Excellent tool for discretization (e.g.: high or low, negative or positive) of continuous variable such as gene expression profiles obtained from chips and RNAseq platforms that provides the cutoff…
Pathview 2018-07-27, 01:52:11
Nice R/Bioconductor package to visualize Differentially expressed genes and differentially methylated regions among KEGG based pathways just providing a gene Entrez ID list with their associated fold…

LATEST DISCUSSIONS

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Bioinformatics projects

TOOLS MAINTAINED

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BioPlat

Desktop

BioPlat / Biomarkers Platform

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A user-friendly open-source bioinformatic resource, which provides a set of analytic tools for the discovery and in silico evaluation of novel prognostic and predictive cancer biomarkers based on…

Fields of interest

WGS analysis
Assists in small-variant detection. Pisces is designed to be used on germline…
Allows the joint analysis of individual-level data and summary statistics. LEP…
Allows annotation and prediction of cis-expression quantitative trait locus…
RNA-seq analysis
Identifies protein-lncRNA interactions. PLIPCOM is constructed from three…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…
Gene expression microarray analysis
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Provides a pattern recognition for cell-free DNA (cfDNA). CfdnaPattern is an…
Permits users to accelerate the construction of coexpression networks on modern…