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Martin Forde

researcher
University of Chicago • Chicago • United States of America

Skills and expertise

Fields of interest
  • WES analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
Programming languages
  • C++
  • Python
  • Shell (Bash)

Fields of interest

WES analysis
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…
Identifies insertions and deletions (indels) from DNA-seq or RNA-seq data.…
Identifies intermediate-size indels using a combination of soft-clipped…
RNA-seq analysis
Assists users in studying allele-specific expression (ASE) within individual…
Enables evaluation, filtering, and analysis of gene models, as well as…
Predicts protein-coding potential on transcripts. mRNN is capable of learning…
ChIP-seq analysis
Assists users to observe the potential function of new genes according to those…
Predicts differential gene expression using histone modifications (HMs).…
Simultaneously quantifies differences in differential transcription factor (TF)…