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MartinTJahn - Omics
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MartinTJahn

Omics
Helmholtz Association of German Research Centres • GEOMAR Helmholtz Centre for Ocean Research Kiel • Kiel • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Python

Favorites and Collections

Favorites

Subviral RNA Database
Dataset
PrimerHunter
Web
CAP3
Web
VirOligo
Dataset
VICTOR
Web
Vipie
Web
Desktop
pLoc-mVirus
Web
FastViromeExplorer
Desktop

Collections

No collections...

Fields of interest

WGS analysis
Trains a decision tree from single nucleotide polymorphism database (dbSNP) and…
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
Allows users to learn rule-based models of phenotypes from their data. Kover is…
RNA-seq analysis
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
Allows demultiplexing 5’-indexed reads. Axe matches the prefix of a sequence…
Predicts gene regulatory regions from genome sequences. DeepGMAP supplies a…
Protein interaction analysis
Provides a sparse network component analysis algorithm. SparseNCA is a two…
Allows to build a high-quality RNA-seq-based Gene Co-expression Network (GCN)…
Permits detection of variables linked to disease diagnosis and progression in…