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Matthew Jenkins - MRes Student
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Matthew Jenkins

MRes Student
Cardiff University • Cardiff • United Kingdom

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • aCGH data analysis
Languages
  • English
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Classifies protein sequence and identifies remote protein homology via…
Allows to scale genome-wide analysis. Dot2dot is an algorithm for tandem repeat…
Permits users to realize de novo assembling for recovering viral haplotypes…
RNA-seq analysis
Identifies high-risk individuals for cancers based on their germline genomic…
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
aCGH data analysis
Consists of a Bayesian, unsupervised, integrative clustering model for…
Combines several steps for a high-quality probe and primer design for a variety…
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…