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Michael Gribskov - Genomics for the People
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Michael Gribskov

Genomics for the People
Purdue University System • Purdue University • West Lafayette • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression microarray analysis
Languages
  • English
Programming languages
  • C
  • C++
  • Fortran
  • Groovy
  • Java
  • Javascript
  • Lua
  • MATLAB
  • Pascal
  • Perl
  • Python
  • R
  • Shell (Bash)
  • Other

Favorites and Collections

Favorites

Meraculous
Desktop
RSEM
Desktop
QUAST
Desktop
KmerGenie
Desktop
SOAP2
Desktop

Collections

No collections...

Reviews and Discussions

LATEST REVIEWS

SOPRA 2018-10-09, 13:55:13
Has not been updated since 2011, appears to be no longer in active development.
CEGMA 2018-10-05, 01:24:20
CEGMA is no longer in development. Use BUSCO instead.

LATEST DISCUSSIONS

Open
Scarpa 2018-10-09, 14:02:04
0 comments
http://compbio.cs.toronto.edu/hapsembler/scarpa-0.241.tar.gz

Fields of interest

De novo sequencing analysis
Assists in small-variant detection. Pisces is designed to be used on germline…
Represents all sequence reads and their similarity relationships using a graph…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
RNA-seq analysis
Identifies protein-lncRNA interactions. PLIPCOM is constructed from three…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…
Gene expression microarray analysis
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Provides a pattern recognition for cell-free DNA (cfDNA). CfdnaPattern is an…
Permits users to accelerate the construction of coexpression networks on modern…