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Michal Ciach - Mathematical modelling & software development
Open to new opportunities
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Open to new opportunities

Michal Ciach

Mathematical modelling & software development
University of Warsaw • Warsaw • Poland

Skills and expertise

Fields of interest
  • MS-based untargeted proteomics
  • MS-based untargeted metabolomics
  • Mass spectrometry imaging
Languages
  • English
Programming languages
  • C++
  • Fortran
  • Python

TOOLS MAINTAINED

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LTI

Desktop

LTI / Locus Tree Inference

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Enables decomposition of a gene tree into trees consistent with a species tree. LTI is a program that can serve for: (i) finding sources of incongruences between gene and species trees, (ii) the…

ETDetective

Desktop

ETDetective

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Provides a model of the electron-driven reactions occurring inside the mass spectrometer. ETDetective allows users to express the mass spectrum in terms of parameters such as the total intensity of…

Fields of interest

MS-based untargeted proteomics
Consists of an identification and quantification error model of label-free…
Extracts meta and scan data and performs quantification as well as quality…
Stores projects and creates a directory of analysed results and parameter.…
MS-based untargeted metabolomics
Consists of a filtering approach for the linear noise approximation (LNA) in…
Proceeds to automatic batch-conversion of capillary electrophoresis coupled to…
Provides a package for metabolic modeling of microbial communities. Micom…
Mass spectrometry imaging
Plots and overlays interactive 2D maps from deconvoluted liquid chromatography…
Assists users with multiple imaging mass spectrometry (IMS) analyses.…
Supplies an algorithm for peak deconvolution for linear matrix-assisted laser…