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Michal Ziv-Ukelson - Computational Genomics
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Michal Ziv-Ukelson

Computational Genomics
Ben-Gurion University of the Negev • Beersheba • Israel

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English

TOOLS MAINTAINED

RAGB

Desktop

RAGB / Reference-Anchored Gene Blocks

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Enumerates conserved blocks that are centered in small components of a given input DNA element and ranks them according to a probabilistic ranking score. RAGB is based on interrogating a given…

MotifNet

Web

MotifNet

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Provides an open-access web-server for network motif analysis. MotifNet functions as an interactive browser for exploring the motifs and their instances. The user can filter motifs by their…
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StemSearch

Web
Desktop

StemSearch

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Searches for RNA homologues in a genomic sequence. StemSearch uses an inverted-index based sequence-structure RNA search engine. It is based on identifying potential stems in genomic sequences and…

Fields of interest

WGS analysis
Assists in small-variant detection. Pisces is designed to be used on germline…
Allows the joint analysis of individual-level data and summary statistics. LEP…
Allows annotation and prediction of cis-expression quantitative trait locus…
RNA-seq analysis
Identifies protein-lncRNA interactions. PLIPCOM is constructed from three…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…
Metagenomic sequencing analysis
Simulates reads from evolving microbial populations. MetaSMC supports all…
Serves as a function prediction pipeline to detect protein-level annotations to…
Assists users for visualizing ancestry data. AncestryView first proceeds by…