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Michal Ziv-Ukelson - Computational Genomics
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Michal Ziv-Ukelson

Computational Genomics
Ben-Gurion University of the Negev • Beersheba • Israel

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English

TOOLS MAINTAINED

RAGB

Desktop

RAGB / Reference-Anchored Gene Blocks

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Enumerates conserved blocks that are centered in small components of a given input DNA element and ranks them according to a probabilistic ranking score. RAGB is based on interrogating a given…

MotifNet

Web

MotifNet

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Provides an open-access web-server for network motif analysis. MotifNet functions as an interactive browser for exploring the motifs and their instances. The user can filter motifs by their…
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StemSearch

Web
Desktop

StemSearch

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Searches for RNA homologues in a genomic sequence. StemSearch uses an inverted-index based sequence-structure RNA search engine. It is based on identifying potential stems in genomic sequences and…

Fields of interest

WGS analysis
Calculates average amino-acid identity (AAI) between a query proteome and all…
Prioritizes cancer gene by integrating diverse data types on a directed…
Assesses Alu/Alu-mediated rearrangement (AAMR) hotspots and their role in human…
RNA-seq analysis
Predicts gene regulatory regions from genome sequences. DeepGMAP supplies a…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Provides a wide range of descriptors of transcript quality and generates a…
Metagenomic sequencing analysis
Enables utilization of available data and accurate inference of species tree…
Allows comparison and separation of orthology relationships. CAT uses the…
Constructs and publishes websites for synteny block analyses by exploiting…