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Michele Berselli - Bioinformatician and software developer
Open to new opportunities
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Open to new opportunities

Michele Berselli

Bioinformatician and software developer
University of Padua • Padova • Italy

My research activity is related to bioinformatics and computational biology. Currently, I am working on the analysis of omics data and their integration with data derived from the analysis of the DNA primary sequence. In particular, my work focuses…

Skills and expertise

Fields of interest
  • WGS analysis
  • ChIP-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • French
  • Italian
Programming languages
  • C
  • C++
  • Perl
  • Python
  • R

TOOLS MAINTAINED

NeSSie

Desktop

NeSSie / Nucleic-acids elements of Sequence Symmetry identification

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Searches imperfection-tolerant symmetric motifs at genome wide scale. NeSSie uses the calculation of Shannon entropy and simple linguistic complexity measures to correlate potential enrichment of…

Fields of interest

WGS analysis
Serves for an end-to-end multiparty computation (MPC) protocol for secure…
Offers a pipeline tool for post-processing structural variant calls. MAVIS…
Permits users to realize de novo assembling for recovering viral haplotypes…
ChIP-seq analysis
Aggregates multiples types of data to determine transcription factors (TFs)…
Provides several scripts to predict active enhancers and promoters in a cell…
Generates and analyzes executable models from single-cell gene expression data.…
Metagenomic sequencing analysis
Performs assignment for bacterial 16S and amplicon sequencing. HmmUFOtu is a…
Corrects long read hybrid errors. HG-CoLoR combines both (i) the idea to…
Determines bacterial plasmid sequences in genomic and metagenomic assemblies.…