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Michelle Kendall - Maths, stats and coding in phylogenetics and HIV
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Michelle Kendall

Maths, stats and coding in phylogenetics and HIV
University of Oxford • Oxford • United Kingdom

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • R

TOOLS MAINTAINED

treespace

Desktop
Web

treespace

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Consists of a method for comparing trees whose labels belong to a pre-defined set of categories. treespace is a tool including a measure of distance between two trees, and a measure of concordance…

Fields of interest

WGS analysis
TProvides a web app designed for the prediction of eukaryotic selenocysteine…
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Finds somatic copy number alterations (sCNA) from the cell free DNA (cfDNA) of…
De novo sequencing analysis
Retrieves coding regions of mt genomes from RNA-seq data. Trimitomics proposes…
Performs secure analyses and visualization of users’ private functional…
Assists user in gene team problem. This algorithm has a time complexity…
Metagenomic sequencing analysis
Provides assistance for comparative analysis of draft genomes. Pan4Draft…
Provides several tools for processing phylogenetic. Gappa can automatically…
Enables phylogenetically informed classification of metagenomic sequences.…