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Miia Rantala

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Aalto University • Helsinki • Finland

Skills and expertise

Fields of interest
  • DNA methylation array analysis
  • Gene expression array analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • C++
  • Java
  • MATLAB
  • Python

Fields of interest

DNA methylation array analysis
Extends the Integrative Genomics Viewer (IGV) with feature for curation…
Enables correction of batch effects in case-control microbiome studies.…
Performs secure analyses and visualization of users’ private functional…
Gene expression array analysis
Enables visualization and exploration of next-generation sequencing (NGS) data.…
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
Normalizes measurement of long gene expression (LGE) within RNA-seq and…
Protein interaction analysis
Fragments pathways into functional modules and uses these to predict…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
Provides a method based on fractal theory to count motifs in biological…