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Min Li - Professor
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Min Li

Professor
Central South University • Changsha • China

Skills and expertise

Fields of interest
  • ChIP-seq analysis
  • DNA methylation array analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • C++

TOOLS MAINTAINED

SCOP

Desktop

SCOP

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Permits users to classify contigs. SCOP is a scaffolding method that optimizes the scaffold graph by splitting the vertices and removing edges. This application employs alignment results and…
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PECC

Algorithm

PECC

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Identifies the miss-assembly errors in contigs based on the paired-end-read distribution and ameliorates the performance of scaffolding results. PECC has four major functions: i) mapping paired-end…

DyNetViewer

Desktop

DyNetViewer

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Serves for dynamic network construction analysis and visualization. DyNetViewer allows users to observe how the network changes over time. Node centrality analysis and cluster analysis can also be…
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KBMF-MDI

Algorithm

KBMF-MDI / Kernelized Bayesian matrix factorization with multiple-kernel learning for miRNA-disease association inference

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Assists users to study the associations between miRNAs and diseases based on their similarities. KBMF-MDI uses sequence and function information of miRNAs to estimate similarity in miRNAs. This…
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ISEA

Desktop

ISEA / Iterative Seed-Extension Algorithm

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Provides an iterative seed-extension algorithm for de novo assembly. ISEA comports five steps: (i) preprocessing, (ii) graph and seed building, (iii) contig extension, (iv) merging and (v)…

IPCA

Desktop

IPCA

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A clustering algorithm based on a new topological structure for identifying complexes in large protein interaction networks. The algorithm IPCA is applied to the protein interaction network of…

HC-PIN

Desktop

HC-PIN

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A fast hierarchical clustering algorithm based on the local metric of edge clustering value which can be used both in the unweighted network and in the weighted network. The proposed algorithm HC-PIN…

Fields of interest

ChIP-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Allows deduction of gene ontology (GO) attributes of proteins. MetaGO combines…
Performs σ54 recognition. S54Finder was developed to work with short DNA…
DNA methylation array analysis
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Protein interaction analysis
Deduces target gene expression profiles using a conditional generative model.…
Enables the simplification and compression of graphs based on high frequency…
Allows the extraction of protein-protein interactions (PPIs) including…