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Mohamad ALKADI - Research in pathogenic microbes
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Mohamad ALKADI

Research in pathogenic microbes
Osaka University • Osaka • Japan

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • Arabic
  • English
Programming languages
  • Python
  • R

Fields of interest

De novo sequencing analysis
Performs automated joint deconvolution and phylogeny inference of tumor genomic…
Allows users to infer population structure. POPSTR is a Bayesian integrative…
Infers automatically single-copy marker genes. ezTree is a computational…
RNA-seq analysis
Provides a tool to select the band width according to the read’s error rates.…
Aims to represent a family of aligned protein sequences or a collection of…
Carries out gene expression correlation analysis. GECO is a web server that…
ChIP-seq analysis
Maps bisulfite-treated short DNA reads to a reference genome. BisPin supports…
Examines cis-regulatory modules (CRM) and cis-regulatory elements (CRE). EDCC…
Examines epigenomic and transcriptomic next generation sequencing (NGS) data.…