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Yutaka Negishi - wes, single cell rna-seq
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Yutaka Negishi

wes, single cell rna-seq
University of Cape Town • Rondebosch • South Africa

Skills and expertise

Fields of interest
  • WES analysis
  • RNA-seq analysis
  • Gene expression microarray analysis
  • English
  • Japanese
Programming languages
  • Python
  • R

Fields of interest

WES analysis
Allows copy number variation (CNV) detection. iCNV can be applied in whole…
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Analyzes structural variants (SVs) and allele-specific copy numbers of genomic…
RNA-seq analysis
Provides an online platform for normalization, calculation of performance…
Allows detection of collaborative transcription factor pairs. MMARGE consists…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
Gene expression microarray analysis
Predicts de novo profile generation based on sequence context. SPBuild…
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Provides a pattern recognition for cell-free DNA (cfDNA). CfdnaPattern is an…