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Nelson Perdigao - Dark Proteome
Open to new opportunities
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Open to new opportunities

Nelson Perdigao

Dark Proteome
University of Lisbon • Lisbon • Portugal

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • NMR-based proteomics analysis
  • NMR-based metabolomics
Languages
  • English
  • French
  • Portuguese
  • Spanish
Programming languages
  • C
  • C++
  • Java
  • Javascript
  • Lisp
  • Perl
  • PHP
  • Python
  • R

TOOLS MAINTAINED

DPD

Dataset

DPD / Dark Proteome Database

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Provides Swiss-Prot protein information. DPD reveals the dark and non-dark regions and their corresponding characterization such as disordered, transmembrane, and compositional bias. It will help…

Fields of interest

De novo sequencing analysis
Reconstructs repetitive sequences, especially in bacterial genomes, using the…
Retrieves coding regions of mt genomes from RNA-seq data. Trimitomics proposes…
Uses existing tools from the Galaxy ToolShed, as well as providing additional…
NMR-based proteomics analysis
Assists users to perform spectra analysis. Dumpling comprises the following…
Automates the elimination of noise peaks. Filt Robot employs convolutional…
Predicts absolute per-residue fluctuation from a three-dimensional protein…
NMR-based metabolomics
Assesses the relationships between metabolites in an untargeted metabolomics…
Automates the discovery of chemical organizations, and conducts a quantitative…
Provides a package for metabolic modeling of microbial communities. Micom…