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Nha Nguyen

University of Pennsylvania • Philadelphia • United States of America

Skills and expertise

Fields of interest
  • ChIP-seq analysis
  • BS-seq analysis
  • Protein interaction analysis
  • English
Programming languages

Fields of interest

ChIP-seq analysis
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Integrates multiple assayed transcription factors (TFs) bound/unbound DNA…
Identifies the conditional dependencies between two types of nodes through a…
BS-seq analysis
Calculates average amino-acid identity (AAI) between a query proteome and all…
Allows users to map long readings with high error rates. lordFAST is designed…
Serves as a dynamic alignment-free and reference-free read compression tool.…
Protein interaction analysis
Enables users to compare the global and local biological signal of networks.…
Detects sequence-structure binding motifs from large sets of RNA sequences.…
Allows users to determine compound-protein interaction based on ensemble of…