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Nicolas Terrapon - Junior Professor / Researcher in the team that maintains the CAZy database
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Nicolas Terrapon

Junior Professor / Researcher in the team that maintains the CAZy database
Aix-Marseille University • Marseille • France

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • aCGH data analysis
Languages
  • English
  • French
Programming languages
  • C++
  • PHP
  • R

TOOLS MAINTAINED

PULDB

Dataset

PULDB / Polysaccharide-Utilization Loci DataBase

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Compiles information about polysaccharide utilization locus. PULDB provides a repository, part of the CAZy database, for over 3900 PUL predictions in more than 70 species. The database provides the…

Fields of interest

WGS analysis
Identifies copy number variants (CNVs) within targeted next generation…
Displays interactive mining of complex neuroimaging genomics data. Genome…
Allows copy number variation (CNV) detection. iCNV can be applied in whole…
Metagenomic sequencing analysis
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
Discovers, delineates and structures metagenomic species pangenomes (MSPs) from…
aCGH data analysis
Consists of a Bayesian, unsupervised, integrative clustering model for…
Combines several steps for a high-quality probe and primer design for a variety…
Analyzes next-generation sequencing (NGS) from experiments using unique…