Features
Company
Pricing
Niema Moshiri's avatar image
Niema Moshiri - Bioinformatician • Doctorate/PhD
Niema Moshiri's avatar image
Upload a photo

Niema Moshiri

Bioinformatician • Doctorate/PhD

University of California System • University of California, San Diego • San Diego, United States of America

Skills and expertise

Omics and technologies

  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis

Programming languages

  • C
  • C++
  • Java
  • MATLAB
  • Python
  • R
  • Shell (Bash)

Languages

  • English

Favorites and Collections

Favorites

TreeCluster
Desktop
FAVITES
Desktop

Collections

No collections...

Bioinformatics projects

Tools maintained

TreeN93

Desktop

TreeN93

(0) 0 discussion(s)
Provides a threshold-free distance-based tool for inferring viral transmission clusters. TreeN93 proceeds by executing transmission cluster identification from pairwise TN93 distances. This software…

TreeSwift

Desktop

TreeSwift

(0) 0 discussion(s)
Assists users in traversing and manipulating trees. TreeSwift is a package that consists of two classes: (i) a Node class, which contains the data and local relationships, and (ii) a Tree class,…

TreeCluster

Desktop

TreeCluster

(0) 0 discussion(s)
Deduces transmission clusters from a given phylogenetic tree inferred from viral sequences. TreeCluster reduces the number of clusters of leaves of a bifurcating phylogenetic tree through several…

Education

Ph.D. Bioinformatics and Systems Biology
University of California, San Diego
2015 - Today
B.S. Bioengineering: Bioinformatics (Minor in Economics)
University of California, San Diego
2011 - 2015