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Nikos Sidiropoulos - PhD Student
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Nikos Sidiropoulos

PhD Student
University of Copenhagen • Copenhagen • Denmark

Skills and expertise

Fields of interest
  • WGS analysis
  • BS-seq analysis
  • aCGH data analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

WGS analysis
Performs automated joint deconvolution and phylogeny inference of tumor genomic…
Allows purity estimation of cancer samples from their DNA methylation profile.…
Handles arbitrarily large multi-sampled files to produces mutation spectra…
BS-seq analysis
Serves as a fully automatic analysis of protein family conservation within a…
Allows users to map long readings with high error rates. lordFAST is designed…
Combines structural variation (SV) calls from different algorithms to reduce…
aCGH data analysis
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Combines several steps for a high-quality probe and primer design for a variety…
Analyzes next-generation sequencing (NGS) from experiments using unique…