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Omer Basha - PhD candidate
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Omer Basha

PhD candidate
Ben-Gurion University of the Negev • Beersheba • Israel

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Protein interaction analysis
  • English
Programming languages
  • Python

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Fields of interest

WGS analysis
Consists of a statistical mixture of different genotyping error profiles. Geck…
Generates realistic Illumina reads via a sequencing simulator. InSilicoSeq…
Integrates predictions of several popular scores (SIFT, Polyphen-2, LRT,…
RNA-seq analysis
Identifies splicing-associated variants (SAVs). SAVnet is an approach for…
Analyzes RNA-seq count data. dNBFA is built on a Bayesian covariate-dependent…
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Protein interaction analysis
Identifies altered subnetworks. Hierarchical HotNet is a method that jointly…
Discovers combinatorial gene-drug modules. HOGMMNC includes prior information…
Serves for predicting potential microbe-noninfectious disease associations…