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Nina Oparina - Researcher. Biomed and not only.
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Nina Oparina

Researcher. Biomed and not only.
Karolinska Institute • Stockholm • Sweden

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Protein interaction analysis
Languages
  • English
  • Russian
Programming languages
  • Perl
  • R

Fields of interest

WGS analysis
Aims to support real-time infectious disease outbreak investigations and…
Consists of a script that constructs a database using the ClinVar XML files.…
Consists of a genomic context explorer. GeneSpy is a program that aims to…
RNA-seq analysis
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Supplies an implementation of Regularized LS-TreeBoost & LAD-TreeBoost…
Allows comparison and separation of orthology relationships. CAT uses the…
Protein interaction analysis
Merges the information encoded in the kinase with the information encoded in…
Predicts cancer-specific synthetic lethal (SL) interactions of any given…
Assists users to identify DNA methylation in distal regions with a causal…