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Osamu Gotoh - Develpment of alignment algorithms and software
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Osamu Gotoh

Develpment of alignment algorithms and software
National Institute of Advanced Industrial Science and Technology (AIST) • Tokyo • Japan

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • Japanese
Programming languages
  • C++

TOOLS MAINTAINED

PRRN

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Desktop

PRRN

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Allows multiple sequence alignment. PRRN is an iterative multiple protein sequence alignment (MPSA) method.

ALN

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Desktop

ALN

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Allows alignment of a pair of nucleotide, amino acid sequences or groups of sequences. ALN is a spliced alignment program that can use a generalized profile as template.
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SPALN

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Desktop

SPALN

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Allows users to map and align cDNA or protein sequences onto a whole genomic sequence (WGS). Spaln intends to improve automatic classification of alternative splicing and transcriptional initiation…

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