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Osamu Gotoh - Develpment of alignment algorithms and software
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Osamu Gotoh

Develpment of alignment algorithms and software
National Institute of Advanced Industrial Science and Technology • Tsukuba • Japan

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • Japanese
Programming languages
  • C++

TOOLS MAINTAINED

FitIld

Desktop

FitIld / Fit an Intron Length Distribution

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Allows users to model several intron length distributions. FitIld is a program that assists users to construct statistical models of Intron length distributions (ILDs) and compare them with one…

PRRN

Web
Desktop

PRRN

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Allows multiple sequence alignment. PRRN is an iterative multiple protein sequence alignment (MPSA) method.

ALN

Web
Desktop

ALN

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Allows alignment of a pair of nucleotide, amino acid sequences or groups of sequences. ALN is a spliced alignment program that can use a generalized profile as template.
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SPALN

Web
Desktop

SPALN

(0) 0 discussion(s)
Allows users to map and align cDNA or protein sequences onto a whole genomic sequence (WGS). Spaln intends to improve automatic classification of alternative splicing and transcriptional initiation…

Fields of interest

WGS analysis
Enables distributed, likelihood-free inference for computationally demanding…
Enables users to fix drivers based on various mapping criteria and stringency.…
Enables computation of kinship from the founder inbreeding coefficients. PedKin…
RNA-seq analysis
Allows to build a high-quality RNA-seq-based Gene Co-expression Network (GCN)…
Allows integration and visualization of population genetics, mutation damage…
Provides a predictor that combines the deleteriousness index of the artificial…
Gene expression array analysis
Allows users to compare genomic structures and annotations across multiple…
Permits users to perform co-expression analysis. CNNC is an application that…
Models data to maintain realistic patterns of variation and correlation. FANGS…