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Pantelis Topalis - Genomicist
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Pantelis Topalis

Genomicist
Foundation for Research and Technology Hellas • Ir├íkleion • Greece

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
Programming languages
  • Perl
  • Python
  • R

Fields of interest

De novo sequencing analysis
Identifies and prioritises causal genes of loci associated with human disease.…
Allows users to perform exact pairwise alignment. RecNW is an application that…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…
RNA-seq analysis
Performs alignments to fusion and non-fusion gene constructs simultaneously.…
Identifies splicing-associated variants (SAVs). SAVnet is an approach for…
Compresses coordinate sorted aligned SAM, BAM or CRAM files. Crumble is a…
ChIP-seq analysis
Aims to represent a family of aligned protein sequences or a collection of…
Simplifies the execution of existing short read aligners (SRA) on…
Corrects long read hybrid errors. HG-CoLoR combines both (i) the idea to…