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biopaw - Senior Research associate
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biopaw

Senior Research associate
Case Western Reserve University • Cleveland • United States of America

Skills and expertise

Fields of interest
  • Immune system analysis
  • RNA-seq analysis
  • scRNA-seq analysis
Languages
  • English
  • French
  • Spanish
Programming languages
  • Fortran
  • Python
  • Shell (Bash)

TOOLS MAINTAINED

FuGEFlow

Desktop

FuGEFlow / Functional Genomics Experiment for Flow cytometry

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Furnishes a model to build software and databases using FuGE. FuGEFlow is an extension of the FuGE software and exploits its features to facilitate automated exchange and manipulation of potentially…

Fields of interest

Immune system analysis
Determines interaction between T cell receptors (TCRs) and peptides presented…
Predicts T-cell epitopes within an input antigen sequence, restricted to a…
Allows users to perform antibody library screening. TrueRepertoire is a…
RNA-seq analysis
Identifies protein-lncRNA interactions. PLIPCOM is constructed from three…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…
scRNA-seq analysis
Enables interrogation of multiple single-cell (scRNA-Seq) datasets. scMerge is…
Offers an imputation technique for single cell RNAseq (scRNAseq) data. deepMC…
Enables researchers to assign a cell type to each cell in an experiment. CaSTLe…