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biopaw - Senior Research associate
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biopaw

Senior Research associate
Case Western Reserve University • Cleveland • United States of America

Skills and expertise

Fields of interest
  • Immune system analysis
  • RNA-seq analysis
  • scRNA-seq analysis
Languages
  • English
  • French
  • Spanish
Programming languages
  • Fortran
  • Python
  • Shell (Bash)

TOOLS MAINTAINED

FuGEFlow

Desktop

FuGEFlow / Functional Genomics Experiment for Flow cytometry

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Furnishes a model to build software and databases using FuGE. FuGEFlow is an extension of the FuGE software and exploits its features to facilitate automated exchange and manipulation of potentially…

Fields of interest

Immune system analysis
Highlights antibodies with anomalous values compared to therapeutics. TAP…
Consists of an open-source deep learning model. MHCSeqNet is a program that can…
Assembles and serves for visualization of known immune response to a specific…
RNA-seq analysis
Implements several different transition kernels for updating a phylogenetic…
Maps a read against a reference region if and only if its estimated alignment…
Consists of a dimension reduction technique designed for complex data sets with…
scRNA-seq analysis
Removes the biases inherent in raw Unique Molecular Identifier (UMI) counts and…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Enhances sequencing depth in low coverage areas with CIGAR string correction.…