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Peter jan Vonk - Fungal genomics
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Peter jan Vonk

Fungal genomics
Utrecht University • Utrecht • Netherlands

Skills and expertise

Fields of interest
  • WES analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

WES analysis
Assesses Alu/Alu-mediated rearrangement (AAMR) hotspots and their role in human…
Allows users to distinguish human and mouse reads in High-Throughput Sequencing…
Allows users to handle sequencing data with unique molecular identifiers…
RNA-seq analysis
Classifies the position preferences of cis-regulatory elements (CRE) via a…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Assists in analyses of gene regulator. This package offers R modules to (i)…
ChIP-seq analysis
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…
Allows users to predict chromatin looping events by exploiting protein binding…
Allows long read alignment to large reference genomes by splitting the index…